The SciML Common Interface for Julia Equation Solvers

The SciML common interface ties together the numerical solvers of the Julia package ecosystem into a single unified interface. It is designed for maximal efficiency and parallelism, while incorporating essential features for large-scale scientific machine learning such as differentiability, composability, and sparsity.

This documentation is made to pool together the docs of the various SciML libraries to paint the overarching picture, establish development norms, and document the shared/common functionality.

Domains of SciML

The SciML common interface covers the following domains:

  • Linear systems (LinearProblem)

    • Direct methods for dense and sparse
    • Iterative solvers with preconditioning
  • Nonlinear Systems (NonlinearProblem)

    • Rootfinding for systems of nonlinear equations
  • Interval Nonlinear Systems

    • Bracketing rootfinders for nonlinear equations with interval bounds
  • Integrals (quadrature) (IntegralProblem)

  • Differential Equations

    • Discrete equations (function maps, discrete stochastic (Gillespie/Markov) simulations) (DiscreteProblem)
    • Ordinary differential equations (ODEs) (ODEProblem)
    • Split and Partitioned ODEs (Symplectic integrators, IMEX Methods) (SplitODEProblem)
    • Stochastic ordinary differential equations (SODEs or SDEs) (SDEProblem)
    • Stochastic differential-algebraic equations (SDAEs) (SDEProblem with mass matrices)
    • Random differential equations (RODEs or RDEs) (RODEProblem)
    • Differential algebraic equations (DAEs) (DAEProblem and ODEProblem with mass matrices)
    • Delay differential equations (DDEs) (DDEProblem)
    • Neutral, retarded, and algebraic delay differential equations (NDDEs, RDDEs, and DDAEs)
    • Stochastic delay differential equations (SDDEs) (SDDEProblem)
    • Experimental support for stochastic neutral, retarded, and algebraic delay differential equations (SNDDEs, SRDDEs, and SDDAEs)
    • Mixed discrete and continuous equations (Hybrid Equations, Jump Diffusions) (AbstractDEProblems with callbacks)
  • Optimization (OptimizationProblem)

    • Nonlinear (constrained) optimization
  • (Stochastic/Delay/Differential-Algebraic) Partial Differential Equations (PDESystem)

    • Finite difference and finite volume methods
    • Interfaces to finite element methods
    • Physics-Informed Neural Networks (PINNs)
    • Integro-Differential Equations
    • Fractional Differential Equations

The SciML common interface also includes ModelingToolkit.jl for defining such systems symbolically, allowing for optimizations like automated generation of parallel code, symbolic simplification, and generation of sparsity patterns.

Extended SciML Domain

In addition to the purely numerical representations of mathematical objects, there are also sets of problem types associated with common mathematical algorithms. These are:

  • Data-driven modeling

    • Discrete-time data-driven dynamical systems (DiscreteDataDrivenProblem)
    • Continuous-time data-driven dynamical systems (ContinuousDataDrivenProblem)
    • Symbolic regression (DirectDataDrivenProblem)
  • Uncertainty quantification and expected values (ExpectationProblem)

Inverse Problems, Parameter Estimation, and Structural Identification

We note that parameter estimation and inverse problems are solved directly on their constituent problem types using tools like DiffEqFlux.jl. Thus for example, there is no ODEInverseProblem, and instead ODEProblem is used to find the parameters p that solve the inverse problem.

Common Interface High Level

The SciML interface is common as the usage of arguments is standardized across all of the problem domains. Underlying high level ideas include:

  • All domains use the same interface of defining a AbstractSciMLProblem which is then solved via solve(prob,alg;kwargs), where alg is a AbstractSciMLAlgorithm. The keyword argument namings are standardized across the organization.
  • AbstractSciMLProblems are generally defined by a SciMLFunction which can define extra details about a model function, such as its analytical Jacobian, its sparsity patterns and so on.
  • There is an organization-wide method for defining linear and nonlinear solvers used within other solvers, giving maximum control of performance to the user.
  • Types used within the packages are defined by the input types. For example, packages attempt to internally use the type of the initial condition as the type for the state within differential equation solvers.
  • solve calls should be thread-safe and parallel-safe.
  • init(prob,alg;kwargs) returns an iterator which allows for directly iterating over the solution process
  • High performance is key. Any performance that is not at the top level is considered a bug and should be reported as such.
  • All functions have an in-place and out-of-place form, where the in-place form is made to utilize mutation for high performance on large-scale problems and the out-of-place form is for compatibility with tooling like static arrays and some reverse-mode automatic differentiation systems.

User-Facing Solver Libraries

  • DifferentialEquations.jl

    • Multi-package interface of high performance numerical solvers of differential equations
  • ModelingToolkit.jl

    • The symbolic modeling package which implements the SciML symbolic common interface.
  • LinearSolve.jl

    • Multi-package interface for specifying linear solvers (direct, sparse, and iterative), along with tools for caching and preconditioners for use in large-scale modeling.
  • NonlinearSolve.jl

    • High performance numerical solving of nonlinear systems.
  • Integrals.jl

    • Multi-package interface for high performance, batched, and parallelized numerical quadrature.
  • Optimization.jl

    • Multi-package interface for numerical solving of optimization problems.
  • NeuralPDE.jl

    • Physics-Informed Neural Network (PINN) package for transforming partial differential equations into optimization problems.
  • DiffEqOperators.jl

    • Automated finite difference method (FDM) package for transforming partial differential equations into nonlinear problems and ordinary differential equations.
  • DiffEqFlux.jl

    • High level package for scientific machine learning applications, such as neural and universal differential equations, solving of inverse problems, parameter estimation, nonlinear optimal control, and more.
  • DataDrivenDiffEq.jl

    • Multi-package interface for data-driven modeling, Koopman dynamic mode decomposition, symbolic regression/sparsification, and automated model discovery.
  • SciMLExpectations.jl

    • Extension to the dynamical modeling tools for calculating expectations.

Interface Implementation Libraries

  • SciMLBase.jl

    • The core package defining the interface which is consumed by the modeling and solver packages.
  • DiffEqBase.jl

    • The core package defining the extended interface which is consumed by the differential equation solver packages.
  • SciMLSensitivity.jl

    • A package which pools together the definition of derivative overloads to define the common sensealg automatic differentiation interface.
  • DiffEqNoiseProcess.jl

    • A package which defines the stochastic AbstractNoiseProcess interface for the SciML ecosystem.
  • RecursiveArrayTools.jl

    • A package which defines the underlying AbstractVectorOfArray structure used as the output for all time series results.
  • ArrayInterface.jl

    • The package which defines the extended AbstractArray interface employed throughout the SciML ecosystem.

Using-Facing Modeling Libraries

There are too many to name here and this will be populated when there is time!

Flowchart Example for PDE-Constrained Optimal Control

The following example showcases how the pieces of the common interface connect to solve a problem that mixes inference, symbolics, and numerics.

External Binding Libraries

  • diffeqr

    • Solving differential equations in R using DifferentialEquations.jl with ModelingToolkit for JIT compilation and GPU-acceleration
  • diffeqpy

    • Solving differential equations in Python using DifferentialEquations.jl

Solver Libraries

There are too many to name here. Check out the SciML Organization Github Page for details.

Contributing

Reproducibility

The documentation of this SciML package was built using these direct dependencies,
Status `~/work/SciMLBase.jl/SciMLBase.jl/docs/Project.toml`
  [e30172f5] Documenter v1.14.1
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  [0bca4576] SciMLBase v2.107.0 `~/work/SciMLBase.jl/SciMLBase.jl`
  [789caeaf] StochasticDiffEq v6.81.0
and using this machine and Julia version.
Julia Version 1.11.6
Commit 9615af0f269 (2025-07-09 12:58 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
  CPU: 4 × AMD EPYC 7763 64-Core Processor
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)
A more complete overview of all dependencies and their versions is also provided.
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  [a44049a8] Vulkan_Loader_jll v1.3.243+0
  [a2964d1f] Wayland_jll v1.24.0+0
  [ffd25f8a] XZ_jll v5.8.1+0
  [f67eecfb] Xorg_libICE_jll v1.1.2+0
  [c834827a] Xorg_libSM_jll v1.2.6+0
  [4f6342f7] Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.13+0
  [935fb764] Xorg_libXcursor_jll v1.2.4+0
  [a3789734] Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] Xorg_libXext_jll v1.3.7+0
  [d091e8ba] Xorg_libXfixes_jll v6.0.1+0
  [a51aa0fd] Xorg_libXi_jll v1.8.3+0
  [d1454406] Xorg_libXinerama_jll v1.1.6+0
  [ec84b674] Xorg_libXrandr_jll v1.5.5+0
  [ea2f1a96] Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] Xorg_libxcb_jll v1.17.1+0
  [cc61e674] Xorg_libxkbfile_jll v1.1.3+0
  [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.5+0
  [12413925] Xorg_xcb_util_image_jll v0.4.1+0
  [2def613f] Xorg_xcb_util_jll v0.4.1+0
  [975044d2] Xorg_xcb_util_keysyms_jll v0.4.1+0
  [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.10+0
  [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.2+0
  [35661453] Xorg_xkbcomp_jll v1.4.7+0
  [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0
  [c5fb5394] Xorg_xtrans_jll v1.6.0+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [35ca27e7] eudev_jll v3.2.14+0
  [214eeab7] fzf_jll v0.61.1+0
  [a4ae2306] libaom_jll v3.12.1+0
  [0ac62f75] libass_jll v0.17.4+0
  [1183f4f0] libdecor_jll v0.2.2+0
  [2db6ffa8] libevdev_jll v1.13.4+0
  [f638f0a6] libfdk_aac_jll v2.0.4+0
  [36db933b] libinput_jll v1.28.1+0
  [b53b4c65] libpng_jll v1.6.50+0
  [f27f6e37] libvorbis_jll v1.3.8+0
  [009596ad] mtdev_jll v1.1.7+0
  [1317d2d5] oneTBB_jll v2022.0.0+0
  [1270edf5] x264_jll v10164.0.1+0
  [dfaa095f] x265_jll v4.1.0+0
  [d8fb68d0] xkbcommon_jll v1.9.2+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [05823500] OpenLibm_jll v0.8.5+0
  [efcefdf7] PCRE2_jll v10.42.0+1
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

You can also download the manifest file and the project file.