StructuralIdentifiability.jl
StructuralIdentifiability.jl is a comprehensive toolbox for assessing identifiability parameters.
Installation
To install StructuralIdentifiability.jl, use the Julia package manager:
using Pkg
Pkg.add("StructuralIdentifiability")Citation
@article{structidjl,
author = {Dong, R. and Goodbrake, C. and Harrington, H. and Pogudin G.},
title = {Differential Elimination for Dynamical Models via Projections with Applications to Structural Identifiability},
journal = {SIAM Journal on Applied Algebra and Geometry},
url = {https://doi.org/10.1137/22M1469067},
year = {2023}
volume = {7},
number = {1},
pages = {194-235}
}Feature Summary
StructuralIdentifiability.jl can assess local and global identifiability of ODE models. In addition to these straightforward identifiability queries on individual parameters, the package can distinguish between single- and multi-experiment identifiability.
Feature List
- Local identifiability checks
- Global identifiability checks
- Assessment of identifiable functions of parameters and states
- Model reparametrization (experimental)
Contributing
Please refer to the SciML ColPrac: Contributor's Guide on Collaborative Practices for Community Packages for guidance on PRs, issues, and other matters relating to contributing to StructuralIdentifiability.
There are a few community forums:
- The #diffeq-bridged channel in the Julia Slack
- JuliaDiffEq on Gitter
- On the Julia Discourse forums
- See also SciML Community page
Reproducibility
The documentation of this SciML package was built using these direct dependencies,
Status `~/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl/docs/Project.toml`
[6e4b80f9] BenchmarkTools v1.6.0
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[961ee093] ModelingToolkit v10.1.0
[220ca800] StructuralIdentifiability v0.5.15 `~/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl`and using this machine and Julia version.
Julia Version 1.11.5
Commit 760b2e5b739 (2025-04-14 06:53 UTC)
Build Info:
Official https://julialang.org/ release
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: 4 × AMD EPYC 7763 64-Core Processor
WORD_SIZE: 64
LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)A more complete overview of all dependencies and their versions is also provided.
Status `~/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl/docs/Manifest.toml`
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