Finding Input-Output Equations

StructuralIdentifiability.find_ioequationsFunction
find_ioequations(ode, [var_change_policy=:default])

Finds the input-output equations of an ODE system Input:

  • ode - the ODE system
  • var_change_policy - whether to perform automatic variable change, can be one of :default, :yes, :no

Output:

  • a dictionary from "leaders" to the corresponding input-output equations

Reducing with respect to Input-Output Equations

StructuralIdentifiability.PBRepresentationType

The structure for storing a projection-based representation of differential ideal (see Section 2.3 https://arxiv.org/abs/2111.00991). Contains the following fields:

  • y_names - the names of the variables with finite order in the profile (typically, outputs)
  • u_names - the names of the variables with infinite order in the profile (typically, inputs)
  • param_names - the names of the parameters
  • profile - the profile of the PB-representation (see Definiton 2.13) as a dict from y_names with finite orders to the orders
  • projections - the corresponding projections (see Definition 2.15) as a dict from y_names to the projections
StructuralIdentifiability.pseudodivisionFunction
pseudodivision(f, g, x)

Computes the result of pseudodivision of f by g as univariate polynomials in x Input:

  • f - the polynomail to be divided
  • g - the polynomial to divide by
  • x - the variable for the division

Output: the pseudoreminder of f divided by g w.r.t. x

StructuralIdentifiability.diffreduceFunction
diffreduce(diffpoly, pbr)

Computes the result of differential reduction of a differential polynomial diffpoly with respect to the charset defined by a PB-representation pbr Input:

  • diffpoly - a polynomial representing a differential polynomial to be reduced
  • pbr - a projection-based representation

Output: the result of differential reduction of diffpoly by pbr considered as a characteristic set (see Remark 2.20 in the paper)